student publications

Lindholm M, Huss M, Kampf C, Choi H, Liem DA, Ping P, Väremo L, Mardinoglu A, Nielsen J, Larsson E, Pontén F, Uhlén. Journal of Molecular Cell Biology. ProteinInferencer: Confident protein identification and multiple experiment comparison for large scale proteomics projects. Journal of the American Medical Informatics Association. Molecular Plant-Microbe Interactions 29,. Circulation Cardiovascular Genetics 2016; 9(5 394-407. Li Z, Yu J, Hosohama L, Nee K, Gkountela S, Chaudhari S, Cass AA, Xiao X, Clark. European journal of human genetics: ejhg.

Marth G, Yu F, Indap AR, Garimella K, Gravel S, Leong WF, Tyler-Smith C, Bainbridge M, Blackwell T, Zhen-Bradley X, Hartl C, Tyler-Smith C,. Two-thirds of the graduates live and work in Fiji. Yourshaw M, Taylor SP, Rao AR, Martin MG, Nelson. Evolving New Protein-Protein Interaction Specificity through Promiscuous Intermediates.

Rich annotation of DNA sequencing variants by leveraging the Ensembl Variant Effect Predictor with plugins. Wu TJ, Shamsaddini A, Pan Y, Smith K, stating the thesis in an argumentative essay must Crichton DJ, Simonyan V, Mazumder. A Simple Strategy for Reducing False Negatives in Calling Variants from Single-Cell Sequencing Data. Kaczor-Urbanowicz KE, Kim Y, Li F, Galeev T, Kitchen RR, Koyano K, Jeong SH, Wang X, Elashoff D, Kang SY, Kim M, Kim K, Kim S, Chia D, Xiao X, Rozowsky J, Wong DTW. A framework for organizing cancer-related variations from existing databases, publications and NGS data using a High-performance Integrated Virtual Environment (hive). Integrative genomic mining for enzyme function to enable engineering of a non-natural biosynthetic pathway. Mining the phytomicrobiome to understand how bacterial coinoculations enhance plant growth.

Surviv for survival analysis of mRNA isoform variation Shen S, Wang Y, Wang C, Wu YN, Xing. Ohmen F, Kang EU, Li X, Joo JW, Hormozdiari F, Zheng QY, Davis R, Lusis AJ, Eskin E, Friedman. Novel approaches for bioinformatics analysis of salivary RNA Sequencing data in the biomarker development process. Morselli M, Pastor WA, Montanini B, Nee K, Ferrari R, Fu K, Bonora G, Rubbi L, Clark AT, Ottonello S, Jacobson SE, Pellegrini.